YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17989441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	57	0.92
Non-Cytoplasmic	58	77	0.80
Transmembrane Helix	78	96	0.92
Cytoplasmic	97	108	0.81
Transmembrane Helix	109	128	0.95
Non-Cytoplasmic	129	135	0.79
Transmembrane Helix	136	159	0.90
Cytoplasmic	160	168	0.85
Transmembrane Helix	169	190	0.91
Non-Cytoplasmic	191	204	0.89
Transmembrane Helix	205	225	0.95
Cytoplasmic	226	267	0.95
Transmembrane Helix	268	287	0.92
Non-Cytoplasmic	288	302	0.83
Transmembrane Helix	303	324	0.93
Cytoplasmic	325	334	0.89
Transmembrane Helix	335	354	0.95
Non-Cytoplasmic	355	360	0.75
Transmembrane Helix	361	381	0.92
Cytoplasmic	382	388	0.72
Transmembrane Helix	389	409	0.88
Non-Cytoplasmic	410	424	0.79
Transmembrane Helix	425	446	0.91
Cytoplasmic	447	451	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTFSIPLNN FPLPGVKAMK NSNTAITSPE VVENMTYRKV AFRIIPLLMI CYIIAYLDRV  60
   61 NVGFAKLQMS EELGFSEAIY GLGAGLFFIG YFFFEIPSNI LLHKLGARLW IARIMITWGL 120
  121 LSALFAFVQT EWQFYILRFL LGAAEAGFYP GVILYLTYWF PSHRRGNMFA LFQAGSPAAG 180
  181 IFGNPLSGWI MDQFHDTAGW QGWQWMFVLE AIPAVVLGVV ILLYLDNSVK AAKWLTEEEK 240
  241 AIISRDIEAD SKGKAASHSL MSLVKNPMLW VMMLIYFCFV MGQHGLTLWM PTLIRASGVT 300
  301 SNVTIGLLGA IPFICAIIAM VIFSRSADHY RERRWHLVVP ALLGAVGFVV AASATNTTVS 360
  361 IIFLSMAAAG VLACAPLFWS LPTAILSGAA AAAGIALINS VANLAGFISP YMVGIIRDAT 420
  421 HSSELGMYVL AGFLILGAAI VLCIPASKVN R