YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148369695, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPSFSREDE RQAQSDQGKT MKYIPFILFT VMTNAAAQLM LKYGMITLGP ISFSADTLIQ  60
   61 RIFQIVFNPW VFAGLFTFVI SMASHLYVLS KVDLSFAYPF LSLAYVAVAL CAWLLFKEEL 120
  121 GAYKIAGIAF ICIGTILIAQ SGKVREADKA VTVQEQAQL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	41	0.90
Non-Cytoplasmic	42	65	0.81
Transmembrane Helix	66	89	0.85
Cytoplasmic	90	95	0.81
Transmembrane Helix	96	116	0.95
Non-Cytoplasmic	117	121	0.79
Transmembrane Helix	122	141	0.91
Cytoplasmic	142	159	0.90