YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83269917
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKRLPVTVL SGFLGAGKTT LLNHVLNNRE NRRVAVIVND MSEINVDAAL IREGGADLSR  60
   61 TEEQLVEMTN GCICCTLRDD LLKEVSQLAA QGRFDYLLIE STGISEPLPV AATFEFRDER 120
  121 GKSLSDGARL DTMVTVVDAA NFLKDYASGD FLRDRGESLG EEDERTLVDL LVEQIEFANV 180
  181 VVLNKISMVS KEECALARKV IRSLNPDARI EETDFGQVPL NTILDTRLFD FNKAHEHPLW 240
  241 YKELYGFNQH VPETEEYGAR SFVYRARKPF DPARFQAFID QNWPGVVRSK GFFWLATRPD 300
  301 FVGEISQAGA LVRTSKRGRW WSAVPKHYWP AEPEWQRAMQ PYFHEVWGDR RQEIVFIGID 360
  361 PMRQEAIIAE LDKCLVQEEC FAPECWSGLS DPFPNWSEAA

Type	Start	End	Confidence
Signal Peptide	1	19	0.77
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	400	0.99