YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17988029, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWQPAVSSPA SLMLVSSHSP GTMQVRQRRS NSMAKTMKAA VVRAFGKPLT IDEVPIPQPG  60
   61 PGQIQVAIQA SGVCHTDLHA AEGDWPVKPN PPFIPGHEGV GFVSAVGSGV KHVKEGDRVG 120
  121 IPWLYTACGH CLGGWETLCE EQLNTGYSVN GGFAEYVVAD PNFVGHLPKN IDFNEIAPVL 180
  181 CAGVTVYKGL KVTDTKPGDW VVISGIGGLG HMAVQYARAM GLNVAAVDID DRKLDLARRL 240
  241 GATVTVNAKT VADPAAYIRK ETDGGAQGVL VTAVSPKAFE QALGMVARGG TVSLNGLPPG 300
  301 DFPLSIFNMV LNGVTVRGSI VGTRLDLQES LDFAADGKVK ATIQTGKLED INAIFDDMRQ 360
  361 GNIEGRIVMD LTQ

Type	Start	End	Confidence
Signal Peptide	1	21	0.89
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	373	0.99