YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17987801, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.80
Transmembrane Helix	53	72	0.86
Non-Cytoplasmic	73	80	0.58
Transmembrane Helix	81	101	0.79
Cytoplasmic	102	134	0.61
Transmembrane Helix	135	149	0.60
Non-Cytoplasmic	150	150	0.34
Transmembrane Helix	151	172	0.79
Cytoplasmic	173	177	0.61
Transmembrane Helix	178	198	0.79
Non-Cytoplasmic	199	205	0.49
Transmembrane Helix	206	224	0.74
Cytoplasmic	225	249	0.78
Transmembrane Helix	250	270	0.85
Non-Cytoplasmic	271	273	0.53
Transmembrane Helix	274	292	0.55
Cytoplasmic	293	309	0.56
Transmembrane Helix	310	329	0.94
Non-Cytoplasmic	330	333	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQPQANSDI QSRAARGRVK DAPSGHWVYR VLPQWLWPYA QLARWDRPIG WQLLLWPCWW  60
   61 STALVAGAGA KAGDGAWSVL PSFWHLFLFL VGAIAMRGAG CTYNDLVDQE IDDKVDRTRS 120
  121 RPLPSGQVTR KQAKLFVVLQ ALVGLAVVLQ FNWFSVGLGI FSLLIVAAYP FMKRITDWPQ 180
  181 FVLGLAFSWG ALMGWAATEG SLSLPPVLLY IGAILWTIGY DTIYAHQDKE DDALVGVRST 240
  241 ARLFGKHTKT ALMVLYGGAI GFFAAAFAVV QVPMPALAGL LAAGAHLYRQ ILVLDIDNPD 300
  301 QCLRLFKSNN IVGWLIFLGL VFGTLWVAVK PLV