YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25529274
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPSGANPWY GSHKPMETPF PPFEPNGRVD ASRGPKLSQI PLRIVVPNVI TVLAICAGLT  60
   61 GIRLAFENRF ELAVAMVLLA AFLDGIDGRI ARMIKGSSKF GAQMDSLADI VNFGVAPALV 120
  121 LYAFMLDQAR SFGWIAALLY AIACCLRLAR FNVMLEDPNR PAWQNNYFIG VPAPAGAMLV 180
  181 LLPVYFGFLG LMPTRALAFG VAAYTVAIAF LLVSRLPVYN GKSAGSLVRR DIVMPLILCV 240
  241 VIYVALLMSF TWQTLSLTAL AYLAFLPFSL AAWNKREAAD RKKAAEEASS GDN

Type	Start	End	Confidence
Cytoplasmic	1	43	0.96
Transmembrane Helix	44	64	0.94
Non-Cytoplasmic	65	71	0.74
Transmembrane Helix	72	91	0.90
Cytoplasmic	92	105	0.90
Transmembrane Helix	106	126	0.91
Non-Cytoplasmic	127	131	0.89
Transmembrane Helix	132	151	0.94
Cytoplasmic	152	166	0.87
Transmembrane Helix	167	189	0.91
Non-Cytoplasmic	190	195	0.83
Transmembrane Helix	196	218	0.89
Cytoplasmic	219	231	0.77
Transmembrane Helix	232	247	0.97
Non-Cytoplasmic	248	254	0.61
Transmembrane Helix	255	274	0.89
Cytoplasmic	275	293	0.94