YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17982600, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWSMDWIAD PNAWIGLVTL VVLEIVLGID NLVFIAILAD KLPPHQRNRA RLVGLGLALV  60
   61 MRLVLLASIS WIVTLREPLI SIMGLSFSGR DIIMLTGGLF LLGKGTMELH ERLEGSHGPK 120
  121 SSRIVHAVFW QVIVQIVVLD AVFSLDSVIT AVGMVQHLTV MMIAVILAIG VMMLASRPLM 180
  181 DFVNKHPTVV ILCLGFLMII GFSLVAEGFG LHIPKGYLYA AIGFSVLVEA ANQFARRNRE 240
  241 KLVTTNDLRE RTAGAVLRLL GGSRGENPLS DTVDVIAQQT AASDVFLPEE KEMIRGVLDL 300
  301 AERPVRSIMS PRNEVEWLDL DEDEDKIHAT IRKLSHSRVV VARHQVDEFI GVALVKDLLL 360
  361 DMTDKKAIDW DKVVKQPLVV HENANVLRVM EQLRISPIQL GVVVDEHGSF EGVVTPTDIL 420
  421 EAIAGEFPDE DEEVAVAQSD GQGGYLVDGF TDIRRLSGLL DRDLVDEGDR YTTLAGYALW 480
  481 HLGHLPVGGE SFTADGFDFT IEAMSGRHVE KVRIRPVPDY EV

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.97
Transmembrane Helix	13	38	0.86
Cytoplasmic	39	51	0.92
Transmembrane Helix	52	73	0.94
Non-Cytoplasmic	74	81	0.78
Transmembrane Helix	82	103	0.87
Cytoplasmic	104	123	0.89
Transmembrane Helix	124	145	0.89
Non-Cytoplasmic	146	154	0.75
Transmembrane Helix	155	175	0.92
Cytoplasmic	176	187	0.78
Transmembrane Helix	188	206	0.96
Non-Cytoplasmic	207	215	0.68
Transmembrane Helix	216	235	0.81
Cytoplasmic	236	522	0.88