YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25290626, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.78
Transmembrane Helix	6	25	0.92
Cytoplasmic	26	62	0.79
Transmembrane Helix	63	85	0.88
Non-Cytoplasmic	86	136	0.88
Transmembrane Helix	137	159	0.89
Cytoplasmic	160	177	0.90
Transmembrane Helix	178	197	0.95
Non-Cytoplasmic	198	254	0.84
Transmembrane Helix	255	275	0.91
Cytoplasmic	276	283	0.70
Transmembrane Helix	284	307	0.90
Non-Cytoplasmic	308	327	0.71
Transmembrane Helix	328	350	0.83
Cytoplasmic	351	354	0.51
Transmembrane Helix	355	372	0.68
Non-Cytoplasmic	373	380	0.59
Transmembrane Helix	381	402	0.91
Cytoplasmic	403	419	0.92
Transmembrane Helix	420	441	0.93
Non-Cytoplasmic	442	485	0.64
Transmembrane Helix	486	512	0.78
Cytoplasmic	513	528	0.49
Transmembrane Helix	529	552	0.91
Non-Cytoplasmic	553	567	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNGWFQVL LFCGIVFALV KPLGFYMARV FNGERTLLSP VLAPVERGLY ALAGTSEREE  60
   61 QHWTTYAFSM LLFNLFGFAL LYALMRFQAV MPYNPQAMPA VGPELSFNTA VSFVTNTNWQ 120
  121 NYGGESTLSY LTQMSGLTVQ NFVSAATGMA IAIGLIRAFS RASGKAIGNF WVDMVRSTLY 180
  181 VLLPLCIVLT LVYVWLGVPQ TLGPYITAQT LEGAQQTIAV GPVASQLAIK MLGTNGGGFF 240
  241 NANSAHPFEN PDAISNMIQM VSIFAIGAAF TNVFGRMVGN QRQGWAILAA MGVLFIAGVA 300
  301 VTYWAEAAGN PLMHGFGLAG GNMEGKEVRF GVALSSLFAV ITTAASCGAV NAMHGSFTAL 360
  361 GGLVPLINMQ LGEVIVGGVG AGFYGILLFI VIAIFVAGLM VGRTPEYLGK KIEAKEMKMA 420
  421 VLAILCLPLA MLAFTATATV LPSAVASIGT AGPHGFSEIL YAYTSAAANN GSAFGGLTGN 480
  481 TTWYNITLGF GMLMGRFLVI IPALAIAGSL VTKKTVPASA GTFPTDGPLF VGLLVGTILI 540
  541 VGGLTFLPAL ALGPVAEHLV MAAGQLF