YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25522060
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEEFHRHRP LSVKPPLISC PNYSGSMCIE EYAAASGEDI MKFLLAVSRA IDAANSAIGK  60
   61 CISWLLLAAI FISAINAAMR KAFSMSSNAW LESQWYLFSA VFLIAAAYTL LNNEHVKVDL 120
  121 IYGGLPRKGQ LWVDILGTIF FLMPFCLITV YLSWPVFLQK FASGEVSNNT GGLIQWPVWA 180
  181 LIPIGFTLLS LQGVSELIKR VAILRGDIPD PVAAADAEAA ML

Type	Start	End	Confidence
Cytoplasmic	1	57	0.97
Transmembrane Helix	58	79	0.87
Non-Cytoplasmic	80	93	0.84
Transmembrane Helix	94	112	0.94
Cytoplasmic	113	130	0.94
Transmembrane Helix	131	154	0.91
Non-Cytoplasmic	155	172	0.94
Transmembrane Helix	173	195	0.87
Cytoplasmic	196	222	0.97