YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17740379, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	45	0.80
Non-Cytoplasmic	46	78	0.75
Transmembrane Helix	79	103	0.82
Cytoplasmic	104	122	0.87
Transmembrane Helix	123	143	0.85
Non-Cytoplasmic	144	154	0.84
Transmembrane Helix	155	175	0.95
Cytoplasmic	176	183	0.86
Transmembrane Helix	184	205	0.91
Non-Cytoplasmic	206	214	0.87
Transmembrane Helix	215	238	0.91
Cytoplasmic	239	272	0.95
Transmembrane Helix	273	295	0.89
Non-Cytoplasmic	296	317	0.88
Transmembrane Helix	318	338	0.93
Cytoplasmic	339	368	0.95
Transmembrane Helix	369	393	0.79
Non-Cytoplasmic	394	397	0.66
Transmembrane Helix	398	419	0.79
Cytoplasmic	420	446	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAAEQLAS NLNFSTFAKA EDLKKRLWFT LAALLVYRLG THIPLPGLNP EAYAQAFRGQ  60
   61 ANGILGLFNM FAGGAVERMA IFALGIMPYI SASIIVQLMT SVVPSLEALK KEGEAGRKII 120
  121 NQYTRYGTVL LGTLQAYGIA VGLESGNGLV VDPGMFFRVS TVITLLGGTM FLMWLGEQIT 180
  181 SRGIGNGISL IIFAGIAAGL PKALAGTLEL GRTGALSTPL ILMVVIVAIG VIALIVFVER 240
  241 AQRRLLIQYP KRQVGNRMFQ GDTSHLPLKL NTAGVIPAIF ASSLLLLPAT AAGFAGNTNL 300
  301 PTWATSIIAS LQHGQPLFMA LYGLLIAFFA FFYTAIVFNP KDTADNLKKH GGFIPGIRPG 360
  361 ERTAEYIDYV LTRITVVGAI YLVFVCILPE TLIARTGIPL ALGGTSLLIV VSVTLDTVAQ 420
  421 IQGHLIAQQY EGLIKKSKLR GGKRGR