YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159184815, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.90
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	370	0.99
Transmembrane Helix	371	393	0.89
Cytoplasmic	394	397	0.64
Transmembrane Helix	398	419	0.86
Non-Cytoplasmic	420	425	0.63
Transmembrane Helix	426	445	0.92
Cytoplasmic	446	465	0.92
Transmembrane Helix	466	489	0.87
Non-Cytoplasmic	490	498	0.79
Transmembrane Helix	499	523	0.90
Cytoplasmic	524	554	0.96
Transmembrane Helix	555	576	0.93
Non-Cytoplasmic	577	669	0.99
Transmembrane Helix	670	691	0.92
Cytoplasmic	692	697	0.86
Transmembrane Helix	698	719	0.91
Non-Cytoplasmic	720	726	0.71
Transmembrane Helix	727	746	0.91
Cytoplasmic	747	771	0.85
Transmembrane Helix	772	794	0.89
Non-Cytoplasmic	795	802	0.73
Transmembrane Helix	803	825	0.91
Cytoplasmic	826	857	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHFSRWKTV FIWLLVLASV FIASPNLFSE KQLESMPAWY KDNKVTLGLD LQGGSHIMLK  60
   61 IERSDIVKER LETIVGDVRT QLRDANIRYS GLTGNGQQIQ VRISDPAQME AAKTALRDLT 120
  121 QPVSAGTLVG GSITEVTMND GGDSLLRLNL TDEGIDYRLS SAVSQSIEVV RRRVDEVGTT 180
  181 EPLIQRQGSD RIIVQVPGLQ DPQRLKSLLN QTAKLSFRMV DTTMPAQDAM NGRPPATSEV 240
  241 LYSQDDPPVP YLVERRALVS GDNLVDAQAS FNQQTNEPVV TFRFDSRGAQ RFAQATQQNV 300
  301 GKPFAIVLDN QVISAPVIRE PIIGGSGQIS GSFSVQGAND LAVLLRAGAL PATLTVVEER 360
  361 TVGPSLGNDS ITAGLTASAI GAVGVLIFMF VFYGFFGLLA NIALIVNVVM LIAVLSVIGS 420
  421 TLTLPGIAGI VLTIGMAVDS NVLIYERIRE EVKSGKPLIQ ALDNGFTRAF ATIIDANLTT 480
  481 LIVASVLFYM GTGPVKGFAV TLAVGIITTV FTAYTLTAWM FGYWVRRSRP KHLPKGVRTA 540
  541 MFDGRDIPFM RYRRVVFMIT GVIMLACVGG FVAKGLNLGI DFQGGSVIEV RAKQGEADLA 600
  601 DIRERLNQLN LGEIQAQNFG SPQDVLIRIQ AQDGGENAEQ SAITLVRGEL EDKYDFRRVE 660
  661 VVGPAVSGDL TVTSTIGVLL AMAAIMVYIW VRFEWQFALG AVISMVHDVV FTIGLFVFLG 720
  721 IEFNLTSIAA ILTIIGYSLN DTVVIYDRVR ENLRRYKKMP LSMIIDVSLN QTLSRTILTG 780
  781 LTVLLALLAL YLFGGEVIRS FTFAMLFGVG IGVFSSVYIA APVLIAFKLR PDSKDAEDEK 840
  841 DDKKENNTGA IGGKPAV