YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17934969, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPISEPQQ NGKQEGRSDS GRGPRLREIP FRLLVPNLIT VLAICAGLSG VRLAIEGRFE  60
   61 LAVGMVLLAA FLDGVDGRVA RMMKATSKFG EQMDSLADIV NFGVAPALVV YIYLLDQARS 120
  121 IGWIGALIYV IAAGLRLARF NVMIERPVKA PWQSEFFVGV PAPMGAMLVL LPVYLGFLGV 180
  181 EPDKPFAYVA AAYTVLIGYL LISRLPVWSG KSSTRIRRDL VLPMILVVVL YVAMLMSFTW 240
  241 EVLVLTVAAY LVFIPISARL WHRRYGTLTI EEDAHDDANG GNGLDRGI

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	53	0.93
Non-Cytoplasmic	54	60	0.68
Transmembrane Helix	61	80	0.88
Cytoplasmic	81	95	0.91
Transmembrane Helix	96	115	0.94
Non-Cytoplasmic	116	120	0.89
Transmembrane Helix	121	140	0.94
Cytoplasmic	141	155	0.91
Transmembrane Helix	156	178	0.92
Non-Cytoplasmic	179	185	0.89
Transmembrane Helix	186	208	0.89
Cytoplasmic	209	219	0.84
Transmembrane Helix	220	238	0.89
Non-Cytoplasmic	239	241	0.71
Transmembrane Helix	242	261	0.87
Cytoplasmic	262	288	0.88