YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25522541
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.97
Transmembrane Helix	50	73	0.86
Non-Cytoplasmic	74	103	0.91
Transmembrane Helix	104	126	0.91
Cytoplasmic	127	135	0.87
Transmembrane Helix	136	163	0.84
Non-Cytoplasmic	164	188	0.47
Transmembrane Helix	189	212	0.88
Cytoplasmic	213	228	0.47
Transmembrane Helix	229	251	0.82
Non-Cytoplasmic	252	267	0.47
Transmembrane Helix	268	290	0.73
Cytoplasmic	291	296	0.48
Transmembrane Helix	297	318	0.94
Non-Cytoplasmic	319	330	0.48
Transmembrane Helix	331	358	0.79
Cytoplasmic	359	387	0.63
Transmembrane Helix	388	412	0.86
Non-Cytoplasmic	413	436	0.86
Transmembrane Helix	437	457	0.83
Cytoplasmic	458	486	0.84
Transmembrane Helix	487	508	0.91
Non-Cytoplasmic	509	531	0.81
Transmembrane Helix	532	555	0.86
Cytoplasmic	556	601	0.97
Transmembrane Helix	602	624	0.86
Non-Cytoplasmic	625	631	0.81
Transmembrane Helix	632	652	0.91
Cytoplasmic	653	658	0.86
Transmembrane Helix	659	679	0.94
Non-Cytoplasmic	680	685	0.75
Transmembrane Helix	686	707	0.91
Cytoplasmic	708	727	0.96
Transmembrane Helix	728	749	0.93
Non-Cytoplasmic	750	784	0.93
Transmembrane Helix	785	803	0.95
Cytoplasmic	804	841	0.96
Transmembrane Helix	842	865	0.89
Non-Cytoplasmic	866	872	0.81
Transmembrane Helix	873	892	0.94
Cytoplasmic	893	905	0.82
Transmembrane Helix	906	928	0.89
Non-Cytoplasmic	929	950	0.94
Transmembrane Helix	951	974	0.90
Cytoplasmic	975	994	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDRSRRKPA VGSHSRKKTA AAYDTCNPSP IYCRIAVCRR FPHGLHAARW CAAGPASVAG  60
   61 GVALFGLVSS MFLYSTISGG GVLKYDVEWL PQLGLNFTLR LDGFAWIFAI LITGIGLLVV 120
  121 LYARYYMSSK DPIPRFFAFF LAFMGSMLGV VLSGNVILLS IFWEMTSIFS FLLIGYWHQN 180
  181 AGARDGARMA LTVTGIGGFS LLAGLLILGH MAGSYDLDKI IEAGAAIRAH SLYLPALILI 240
  241 LGGALTKSAQ FPFHFWLPNA MAAPTPVSAY LHSATMVKAG VFLLARFWPV LAGTPEWFWL 300
  301 VGVAGVITLL LGAYFAMFQQ DLKGLLAYST ISHLGLITTL LSLGSPLAAV AAIFHMVNHA 360
  361 TFKASLFMAA GIIDHETGTR DMRRLSGLYT YMPATATLAM AASAAMAGVP LFNGFLSKEM 420
  421 FFAEAVETHA DSLLDRALPY VATLSGAFAV AYSLRFIHTV FFGPKPVDLP NPNPHEPPRW 480
  481 MRFPIEFLVF ACLIVGIVPS LSIGPFLHSA VLSVLGAQTP VYSLSIWHGF NLPLIMSIAA 540
  541 LIGGVTIYAL LGGYFSRCDD GPPIFRHLRG QRIFERILVT VSWKWARWLE STLGTRRLQP 600
  601 QLRLLILVAL LAGFSPLFLS EFSLSLPRVT TFDPIFAILW LIGMIAAMGA AWQAKYHRLA 660
  661 ALIMLGVSGL VTCLTFVWLS APDLAITQLL VEIVTTVLIL LGLRWLPKRF EKVDSSDELP 720
  721 AQLRRARDFL LAAASGIGMS VIAYAVMTLP VPNAIATYFL ERAYTEGGGT NVVNVILVDF 780
  781 RGFDTFGEIA VLAIVALTVF ALLRRFRPAH ESIGVPEQQQ MQNAFDAERP DRSKGDTVRD 840
  841 YLYVPSIVMQ WMFPVIVTFS IFLFIRGHDM PGGGFAAGIT MAIAFLLQYL AGGARWAEDR 900
  901 IRILPLRWMG FGLLMAAATG IGSWYFGYPF LTTYFQYTDI PYIGKMPTAS ALLFDLGVFA 960
  961 TVVGSTVLIL IALAHQSLRN YRVRTPEAAK AEDV