YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25299388, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	31	0.89
Non-Cytoplasmic	32	42	0.83
Transmembrane Helix	43	63	0.91
Cytoplasmic	64	73	0.80
Transmembrane Helix	74	92	0.97
Non-Cytoplasmic	93	100	0.72
Transmembrane Helix	101	121	0.92
Cytoplasmic	122	131	0.79
Transmembrane Helix	132	154	0.91
Non-Cytoplasmic	155	160	0.82
Transmembrane Helix	161	182	0.94
Cytoplasmic	183	192	0.88
Transmembrane Helix	193	212	0.96
Non-Cytoplasmic	213	223	0.74
Transmembrane Helix	224	243	0.96
Cytoplasmic	244	260	0.88
Transmembrane Helix	261	283	0.88
Non-Cytoplasmic	284	293	0.78
Transmembrane Helix	294	316	0.88
Cytoplasmic	317	326	0.81
Transmembrane Helix	327	348	0.91
Non-Cytoplasmic	349	353	0.86
Transmembrane Helix	354	377	0.87
Cytoplasmic	378	393	0.89
Transmembrane Helix	394	416	0.85
Non-Cytoplasmic	417	461	0.93
Transmembrane Helix	462	482	0.93
Cytoplasmic	483	491	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTKVKAVT IAVFVATFMA AIEGTIVSTA MPTIVSQLDG IELMNWIFSV YLLTSAVTVP  60
   61 IYGKLSDLYG RKNIFVIATI IFIIGSSLCG FAQNMEQLII FRAIQGIGAG GILPSTMTII 120
  121 ADVYPFEKRA KVLGFMGSAW GIAGVFGPLV GGFLVDQLSW HWIFFINVPI GILTILLILL 180
  181 YLREKVEHVK LPIDYLGASL FTVALLGLLF ALQRAGESLN WTEPLVVILF AVSIVLFIAF 240
  241 YFVEKRAKDP IMPFVLFKNP VVLIGNLIGF LISAFLIGIN VYIPMWAQGM LGHGATIAGF 300
  301 MLAPLSVTWI IGSFIGGKLL MTLGNRHTVG IGVLITAASG LILALFPAST NDIFFYLNSA 360
  361 FMGFGFGIIF TTTTVTVQDA VPRFQTGIAT ASNTLFRTVG QTIGVAVFGT IFNSVLTSEF 420
  421 RAAAGSEVNR SNLNQLISPQ TSGNVSTDLV DPLRDILYSG LHTVFWVMFA CCIVSYFIHF 480
  481 ILPKKHISGE K