YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25322510, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYYSPQEVT EITIEKGTQK ANSSTLTLVL LGFLGGAFIS LGYLLYIRAV GTMPHEWGSF  60
   61 ATLIGASLFP VGLVCILLGG GELITGNMMA VAIAWYDKKI SFQQLLRNWA IVSVMNLVGA 120
  121 FFVAYFFGHF VGLTEGDFLP KTLATAGAKI NDPFWVAFVS GIGCNWFVGI AVWLCYAAKD 180
  181 FAGKILGIWF PVMAFVAIGF QHVVANMFII PAAIFAGYYS WADFIWNVIP VYLGNVVGGA 240
  241 VFVSLFYFLA YKKNAPKKVK EEIHQPIEEN

Type	Start	End	Confidence
Cytoplasmic	1	25	0.95
Transmembrane Helix	26	47	0.94
Non-Cytoplasmic	48	62	0.85
Transmembrane Helix	63	86	0.86
Cytoplasmic	87	104	0.83
Transmembrane Helix	105	129	0.86
Non-Cytoplasmic	130	153	0.95
Transmembrane Helix	154	177	0.92
Cytoplasmic	178	185	0.91
Transmembrane Helix	186	210	0.84
Non-Cytoplasmic	211	227	0.78
Transmembrane Helix	228	250	0.93
Cytoplasmic	251	270	0.98