YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16802888
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFSRFILM MAIACVAAFI FTGNGLNAKA AEEIYLIGTD TTFAPFEFEK DGEHVGIDMD  60
   61 ILKAIAKDQN FKYEIKAMGF NAAVQALEAN QVDGVIAGMS ITDERKQKFD FSDPYFDSGV 120
  121 VMGILKDNDE IKTYDDLKGK KVAVKTGTEG YAFAEKIKDK YDFDIVVFDD SAQMYDDVKT 180
  181 RNSVACFDDY PVLAYGVQTG NGLKIVTEKE KGNSYGFAVN KGKNQELLEK FNAGLVNIKA 240
  241 SGEYEKILKN YLGKNAIKEN TTEKGFMGII KSSWPALLSG LWLTIRLAVV SLIIAFIIGI 300
  301 TFGFMKVSNS KILRGIATVY VDIFRGTPLI VQAFFFYFGI PAALDFRMPV FLAGVIALSL 360
  361 NAGAYMVEIV RGGIQSVDKG QMEAARSLGL PHKKAMMKVV LPQAIRMMIP SFINQFVITL 420
  421 KDTSIMSAIG LVELTQSGKI IMARTFESTW TWLIIGIMYL IVITILTKIS DRLERRLRND 480
  481

Type	Start	End	Confidence
Signal Peptide	1	30	0.95
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	281	0.99
Transmembrane Helix	282	304	0.93
Cytoplasmic	305	320	0.80
Transmembrane Helix	321	340	0.88
Non-Cytoplasmic	341	349	0.67
Transmembrane Helix	350	369	0.90
Cytoplasmic	370	403	0.85
Transmembrane Helix	404	420	0.61
Non-Cytoplasmic	421	448	0.68
Transmembrane Helix	449	469	0.93
Cytoplasmic	470	480	0.87