YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16802410
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.97
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	232	0.98
Transmembrane Helix	233	252	0.87
Cytoplasmic	253	262	0.91
Transmembrane Helix	263	288	0.88
Non-Cytoplasmic	289	296	0.89
Transmembrane Helix	297	317	0.94
Cytoplasmic	318	337	0.95
Transmembrane Helix	338	359	0.83
Non-Cytoplasmic	360	376	0.80
Transmembrane Helix	377	396	0.96
Cytoplasmic	397	406	0.76
Transmembrane Helix	407	428	0.85
Non-Cytoplasmic	429	452	0.88
Transmembrane Helix	453	474	0.90
Cytoplasmic	475	482	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHRLLGRVM LLLGALGVIL TMSFSYVAAA EKPNIDKPVK GLEQTEKAIV ADDYNKAKDA  60
   61 FQEDKLWWSE NKQVVKEKSY DLAGQIDRQI AEISLGILNN DKQQAMDGIT SLHNLLKTYQ 120
  121 DGTYTDNEGN TNITLSSYIA KLTATKKLVD EKEWAKAATQ IQDLKTEWLA VEGDVVSQSQ 180
  181 AAYDNTERDL MLLDAYINDP AKQAKTADVL DGMTEELKPF ADVTYTWFDA ALIPFREGLE 240
  241 ALLIIATLLT YTKRTKTRTA KRWIIGGTAA GLVVSLALGM IVAFWLSALA FGDNNNLING 300
  301 WAGLIASIMM LYVSYWLHRN SDITRWNNYM EGKSNQALSN GKMISFAFLA FLAILREGLE 360
  361 TVVFLIGMVG RMSNFELLMG ILAGLGVLLI IAFVMLRYSV HIPVKPFFMI SSAIVFYLCF 420
  421 KFMGSGIHSL QLAGVIPTSV EDYLPSIPAL SIYPSWYSFL PQVLLVIFGL TILIKQQIKK 480
  481 KS