YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16415157, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSIVVLGGA GYIGSHAVDE LINRGYEVVV VDNLRTGHKE SIHKKAKFYE GDIRDKAFLS  60
   61 TVFEKESIDS VIHFAASSLV GESMEVPLEY LNNNVYGTQV LLEVMEQFGV KHIVFSSSAA 120
  121 TYGEPERVPI TEDMPTSPES TYGETKLIME KMMKWCDKAY GMKFVALRYF NVAGAKADGS 180
  181 IGEDHKPETH LVPIILQVAL GQREKLAIYG DDYNTPDGTC IRDYVQVEDL IDAHIRALEY 240
  241 LKKGGESNIF NLGSSNGFSV KEMLEAARIV TGKEIPAEVV PRRAGDPGTL VASSDKAREI 300
  301 LGWQPTYTDV KDIIATAWNW HVSHPNGY

Type	Start	End	Confidence
Signal Peptide	1	17	0.58
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	328	0.99