YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25321221, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	25	0.97
Non-Cytoplasmic	26	45	0.90
Transmembrane Helix	46	67	0.93
Cytoplasmic	68	85	0.88
Transmembrane Helix	86	105	0.96
Non-Cytoplasmic	106	133	0.95
Transmembrane Helix	134	155	0.91
Cytoplasmic	156	183	0.91
Transmembrane Helix	184	205	0.91
Non-Cytoplasmic	206	221	0.91
Transmembrane Helix	222	244	0.89
Cytoplasmic	245	253	0.88
Transmembrane Helix	254	275	0.94
Non-Cytoplasmic	276	313	0.95
Transmembrane Helix	314	333	0.92
Cytoplasmic	334	341	0.85
Transmembrane Helix	342	361	0.95
Non-Cytoplasmic	362	393	0.89
Transmembrane Helix	394	417	0.88
Cytoplasmic	418	437	0.85
Transmembrane Helix	438	457	0.94
Non-Cytoplasmic	458	464	0.76
Transmembrane Helix	465	487	0.93
Cytoplasmic	488	507	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTNVFWG ASLLVLIAVL FGAFLPEQFE TLTTNVQRFL TSNFGWYYLF VVAIIIIFCI  60
   61 FLILSPIGSI RLGKPGEKPG YSNKSWFAML FSAGMGIGLV FWGAAEPLSH FAVQAPGGEV 120
  121 GSQAAMKDAL RYSFFHWGIS AWSIYAIVAL ALAYFKFRKD TPGLISATLY PILGKHAKGP 180
  181 LGQLIDIIAV FATVIGVATT LGLGAQQING GLTYLFHVPN NFTVQLIIIV IVTVLFLLSA 240
  241 MSGLDKGIQL LSNVNIYVAG VLLILTLILG PTLFIMNNFT NSFGDYLQNI IQMSFQTAPN 300
  301 APDARKWIDS WTIFYWAWWL SWSPFVGIFI ARISRGRTIR QFLLGVIVLP ALVSIFWFAV 360
  361 FGGSAIFVDQ YKDTALSTLA TEQVLFGVFD QFPFGIVLSI VAMILIAVFF ITSADSATFV 420
  421 LGMQTTGGSL NPPNSVKVTW GLLQSGIASV LLYAGGLTAL QNASIIAAFP FSIVIILMIV 480
  481 SLFVSLTKEQ EKLGLYVRPK KSQRSKL