YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25516971, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNAIKWIAI GFAGIILLPL VIVFFIYKKA VGKKEYDPEV LENLDEASQE FVKNTSPLSD  60
   61 VDSRYKYMRL ATKALPSAKD IEIGDVENKK IDGPAGKIPI RIYTPKEDGP FEIIVYYHGG 120
  121 GFVLGGLQTH DAIARKLVQT TGARVVTVDY RLAPENPFPA AVEDAYAALL WVQNHRTSLR 180
  181 AKSSDIIVAG DSVGGNLATV VTQIAKAKGK PNVTAQILLY PATDIFSRDA SVLYPSMDEF 240
  241 AEGYVLTKES LDKFFKLYIA NSSDRKYDPL IAPIRSKDLA GLPKTFIATA EFDPLRDQGE 300
  301 AYAKKLKDAG VEVFAKRFEK VPHGFMTTTS EATDETYELI SEFLEEK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.52
Transmembrane Helix	7	27	0.90
Non-Cytoplasmic	28	347	0.60