YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16800524
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.89
Transmembrane Helix	16	36	0.85
Non-Cytoplasmic	37	50	0.80
Transmembrane Helix	51	73	0.90
Cytoplasmic	74	81	0.87
Transmembrane Helix	82	100	0.97
Non-Cytoplasmic	101	107	0.71
Transmembrane Helix	108	130	0.89
Cytoplasmic	131	146	0.89
Transmembrane Helix	147	167	0.93
Non-Cytoplasmic	168	174	0.71
Transmembrane Helix	175	194	0.91
Cytoplasmic	195	231	0.86
Transmembrane Helix	232	247	0.88
Non-Cytoplasmic	248	265	0.74
Transmembrane Helix	266	288	0.91
Cytoplasmic	289	296	0.83
Transmembrane Helix	297	316	0.95
Non-Cytoplasmic	317	321	0.89
Transmembrane Helix	322	344	0.90
Cytoplasmic	345	356	0.93
Transmembrane Helix	357	379	0.89
Non-Cytoplasmic	380	386	0.76
Transmembrane Helix	387	406	0.96
Cytoplasmic	407	414	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYTKEEKSW IFQDWANSAY SIMITTAILP IYFKGVAANA GIADTTSTAY WGYANSIGTL  60
   61 LISLLAPILG TIADYQFFKK RFFGIFTAIG IAFTFLLIFI PTDAWLLLLG FYVLSLIGFS 120
  121 GANIFYDAFL IDVTTNDRMD KVSSAGYAYG YLGSCIPFII FIIFQATGIL PISDVALVNI 180
  181 GFVMTALWWL FFTIPMWKNV HQIHYIPAVK KPVRTSFKRL FHTVSHISEH KNIVIFLIAY 240
  241 FFYIDGVDTI FRMATSYGID LGISQTTLIL ILLMTQLVAF PFTLLYGYLA KRFSAKPLIF 300
  301 TAIFVYIIIC IYAVFMKTAV DFWILAMLVG TSQGGIQALS RSFFGKIIPK KRSNEFYGFY 360
  361 NIFGKFSAIM GPALMGVITQ ITGKTQYGVA SLIVLFLVGG ILFLFVKEKN LENL