YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16799865
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.94
Transmembrane Helix	18	39	0.89
Non-Cytoplasmic	40	46	0.67
Transmembrane Helix	47	66	0.88
Cytoplasmic	67	97	0.74
Transmembrane Helix	98	117	0.78
Non-Cytoplasmic	118	125	0.75
Transmembrane Helix	126	145	0.94
Cytoplasmic	146	156	0.79
Transmembrane Helix	157	179	0.90
Non-Cytoplasmic	180	197	0.83
Transmembrane Helix	198	221	0.85
Cytoplasmic	222	239	0.94
Transmembrane Helix	240	261	0.92
Non-Cytoplasmic	262	288	0.94
Transmembrane Helix	289	313	0.83
Cytoplasmic	314	337	0.84
Transmembrane Helix	338	359	0.92
Non-Cytoplasmic	360	365	0.88
Transmembrane Helix	366	390	0.88
Cytoplasmic	391	411	0.92
Transmembrane Helix	412	431	0.94
Non-Cytoplasmic	432	445	0.83
Transmembrane Helix	446	467	0.88
Cytoplasmic	468	486	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKETHGEIR RDLKTRHLSM IAIGGSIGTG LFLASGNAIH TAGPGGALVA YIAIGIMVYF  60
   61 LMTSLGEMAT YMPVSGSFST YASRFVDPAF GFALGWNYWF NWAITLAVDI STAAIIVQFW 120
  121 LPNTPAWLWS AIFLLLIFGL NALSVKAYGE SEYWFSIIKV ATVIIFLIVG VLTIVGILGG 180
  181 EVIGFSNFTA GDAPFKGGFF AILGTFLIAG FSFQGTEMVG IAAGESATPE KSVPKAIKQV 240
  241 FWRILLFYIF AIFIIGMIIP YTNPNLLSAE ATDVAISPFT LVFEKAGLAF AASVMNAVIL 300
  301 TSVLSAGNSG LYASTRMLWA MARDKKAPKF LGKVNRRGIP MAALIVTTIV GAMTFITTLT 360
  361 ENGTVIYTWL LSASGLTGFI AWVGIAISHY RFRKAFIKQG HDLNELKYKA KFFPFGPILA 420
  421 LILCILVIVG QDYAAFLKPE FTNPAWWQKI GISYIGLPIF LIFWLSFKFT NKTKVIPLED 480
  481 CKFDQK