YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16799606
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.82
Transmembrane Helix	20	40	0.91
Non-Cytoplasmic	41	116	0.76
Transmembrane Helix	117	137	0.91
Cytoplasmic	138	143	0.54
Transmembrane Helix	144	165	0.82
Non-Cytoplasmic	166	168	0.57
Transmembrane Helix	169	190	0.86
Cytoplasmic	191	196	0.57
Transmembrane Helix	197	213	0.73
Non-Cytoplasmic	214	217	0.70
Transmembrane Helix	218	234	0.94
Cytoplasmic	235	243	0.76
Transmembrane Helix	244	263	0.94
Non-Cytoplasmic	264	398	0.98
Transmembrane Helix	399	419	0.90
Cytoplasmic	420	427	0.89
Transmembrane Helix	428	449	0.95
Non-Cytoplasmic	450	460	0.87
Transmembrane Helix	461	483	0.91
Cytoplasmic	484	491	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGKIKSIST WLWHHLTPQI FAVICVFIIT IIALFVPPYI GMADNGDFFR IFSSNGLFVN  60
   61 NANYDALQFG HFVKEFGIYQ YFNENQVAIY SSQSIFIQIA LLLNKIFWST TVFDVRFLGA 120
  121 LQLVLLLPAI YLLVAGLTAK MKGWPGYVIA VLTVFIFADT AYTAYFNSFF SEGLILIMML 180
  181 YISAGFLLLY QHKYNDYAML GLIFVASLIL ITAKQQNAPI AVVIAVCGIL VFFIRKNRAF 240
  241 RISAAATFFV IFMSGVVMYA FIPGEFVTIN QYQTMTRGVL LDSENPEKSL EEMGMNSEFA 300
  301 LLKGTNFYQK YKMIDLDSKL MEQEFYPNYN FVTVLSYYLE NPKQFGKMLD LSAQNSFSIR 360
  361 PFEMGNFEKA TGYKFKEKTH FFSVYSDVKE KFAPEKFTFL ILWALVFLIG YGVSAFKHFR 420
  421 EKNIRGTLLF DLVVLLIGSG FAVILVTIVG DGEADLTKHN FLFNVCFDLT MLIGAASLLE 480
  481 FYLKKRGERN A