YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16799513
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRWIKVSL VTILIIAVVF VGVIGFQKYQ FSKSRNKVIM QMDRLMKDQD GGNFRRLDKK  60
   61 EDGVEIISYI PKTSTKQDNE IIQKEIEKAK SAEIKKLNRD KDKQGIIFYT YQKQKMAEQV 120
  121 VSYKAVQSEY VKEGKTKFVL KDKKDICKNI VTDAKTGALL TLGDVLIKND ETKLNLKTAA 180
  181 EQELIKTGDI PLKDVGKLGG IKSLVKWDQT DFELTNSELI VPVEAPGISG PKKVNLKLAD 240
  241 IASSVNKRYL PSSVKVPEIP KAKTNKRIAL TFDDGPSASV TPGVLDTLKR YDVKATFFVL 300
  301 GSSVVQNPGL VKRELDEGHQ VGSHSWDHPQ LTKLSEQEVY NQILQTQKVV FDQTGYFPTT 360
  361 MRPPYGAVNK KVADEIGLPI IQWSVDTEDW KNKNAKVVTQ RVLAGATDGA IVLMHDIHKT 420
  421 TAASLDETLK QLKSQGFEFV TINELYGEKL QIGKQYFDKT ESRMVK

Type	Start	End	Confidence
Cytoplasmic	1	7	0.69
Transmembrane Helix	8	26	0.76
Non-Cytoplasmic	27	466	0.99