YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLAVDVFIN KKLILTNAIM PVLRVKKEAS VIVAAHRMSF RTGRVMQEEQ SIQRAVTRLC  60
   61 IQCGLFLLQH GAESALVDEL STRLGLALGM DSVESAISSN AIVLTTIKDG QCLTSTRKNQ 120
  121 DRGINMHVVT EVQHIVILAE HRLLDYKGVE KRFSQLRPLR YPRWLVAFMV GLSCSCFCKL 180
  181 NNGGWDGAVI TFFASMIAMY IRQMLAQRHL HPQINFCITA FVATTISGLM LTLPAFSQTP 240
  241 TIAMAASVLL LVPGFPLINS VADMFKGHIN TGLARWAIAS LLTLATCVGV VMSMTVWGLR 300
  301 GWV

Type	Start	End	Confidence
Cytoplasmic	1	160	0.98
Transmembrane Helix	161	180	0.93
Non-Cytoplasmic	181	186	0.74
Transmembrane Helix	187	206	0.90
Cytoplasmic	207	213	0.91
Transmembrane Helix	214	235	0.92
Non-Cytoplasmic	236	241	0.78
Transmembrane Helix	242	262	0.93
Cytoplasmic	263	275	0.81
Transmembrane Helix	276	297	0.92
Non-Cytoplasmic	298	303	0.81