YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197213862, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSPQSRLRH AVADTFAMVV YCSVVNMLIE IFLSGMSFEQ SLSSRLVAIP VNILIAWPYG  60
   61 VYRDLIMRVA RKASPAGWAK NLADVLAYVT FQSPVYIIIL LTVGAGWHQI VAAVSSNIVV 120
  121 SMLMGAVYGY FLDYCRRLFK VSSYHQAKA

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	34	0.88
Non-Cytoplasmic	35	41	0.84
Transmembrane Helix	42	62	0.89
Cytoplasmic	63	81	0.88
Transmembrane Helix	82	103	0.90
Non-Cytoplasmic	104	109	0.71
Transmembrane Helix	110	132	0.92
Cytoplasmic	133	149	0.96