YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16765325, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSSLLTLL DDIATLLDDI SVMGKLAAKK TAGVLGDDLS LNAQQVTGVR ANRELPVVWS  60
   61 VAKGSLINKV ILVPLALLIS AFIPWAITPL LMLGGAFLCF EGVEKVLHTF EARKHKEDPA 120
  121 ERQKRLEALA AQNPLAFEKD KVKGAVRTDF ILSAEIVAIT LGIVAQAPLL NQVLVLAGIA 180
  181 LVVTIGVYGL VGIIVKLDDM GYWLAEKRSV LAQGVGKGLL IIAPWLMKAL SIVGTLAMFL 240
  241 VGGGIVVHGI APLHHAIEHF AQQQGAFMAH TIPAGLNLVL GFIIGAIVVA LVKGVAKIRG 300
  301 VSH

Type	Start	End	Confidence
Cytoplasmic	1	65	0.77
Transmembrane Helix	66	93	0.73
Non-Cytoplasmic	94	173	0.50
Transmembrane Helix	174	195	0.93
Cytoplasmic	196	228	0.84
Transmembrane Helix	229	251	0.87
Non-Cytoplasmic	252	271	0.83
Transmembrane Helix	272	292	0.93
Cytoplasmic	293	303	0.81