YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|207856662, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEMVDMTKT TTEKKLTPSD IRGVFLRSNL FQGSWNFERM QALGFCFSMV PAIRRLYPEN  60
   61 NDARKQAIKR HLEFFNTHPY VAAPVLGVTL AMEEKRANGA EIDDGAINGI KVGLMGPLAG 120
  121 VGDPIFWGTV RPVFAALGAG IAMSGSLLGP LLFFILFNLV RLATRYYGVA YGYRKGVDIV 180
  181 KDMGGGFLQK LTEGASILGL FVMGALVNKW THVNIPLVVS TITGQDGQTR VTTVQTILDQ 240
  241 LMPGLVPLLL TFACMWLLRK KVNPLWIIVG FFVIGIAGYS VGLLGQ

Type	Start	End	Confidence
Cytoplasmic	1	106	0.72
Transmembrane Helix	107	127	0.52
Non-Cytoplasmic	128	133	0.73
Transmembrane Helix	134	157	0.90
Cytoplasmic	158	190	0.82
Transmembrane Helix	191	212	0.71
Non-Cytoplasmic	213	236	0.79
Transmembrane Helix	237	258	0.79
Cytoplasmic	259	264	0.80
Transmembrane Helix	265	284	0.95
Non-Cytoplasmic	285	286	0.82