YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167993257, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.68
Transmembrane Helix	20	38	0.91
Non-Cytoplasmic	39	40	0.30
Transmembrane Helix	41	59	0.50
Cytoplasmic	60	60	0.34
Transmembrane Helix	61	85	0.76
Non-Cytoplasmic	86	89	0.53
Transmembrane Helix	90	114	0.80
Cytoplasmic	115	123	0.46
Transmembrane Helix	124	145	0.69
Non-Cytoplasmic	146	146	0.51
Transmembrane Helix	147	165	0.89
Cytoplasmic	166	200	0.89
Transmembrane Helix	201	220	0.90
Non-Cytoplasmic	221	237	0.90
Transmembrane Helix	238	260	0.89
Cytoplasmic	261	296	0.97
Transmembrane Helix	297	317	0.88
Non-Cytoplasmic	318	321	0.65
Transmembrane Helix	322	343	0.70
Cytoplasmic	344	350	0.66
Transmembrane Helix	351	373	0.88
Non-Cytoplasmic	374	390	0.68
Transmembrane Helix	391	413	0.64
Cytoplasmic	414	424	0.45
Transmembrane Helix	425	441	0.37
Non-Cytoplasmic	442	450	0.64
Transmembrane Helix	451	471	0.84
Cytoplasmic	472	478	0.77
Transmembrane Helix	479	500	0.91
Non-Cytoplasmic	501	514	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISWGRAMW RNFLGQSPDW YKLALLVFLI VNPFIFLANP FIAGWLLVAE FIFTLAMALK  60
   61 CYPLLPGGLL AIEAVIIGMT SAAHVREEVA ANLEVLLLLM FMVAGIYFMK QLLLFIFTRL 120
  121 LLSIRSKMVL SLAFCVAAAF LSAFLDALTV VAVVISVAVG FYGIYHRVAS SRGEENDMLD 180
  181 DSHIDPHYKT VLEQFRGFLR SLMMHAGVGT ALGGVMTMVG EPQNLIIAKA AGWHFGDFFL 240
  241 RMSPVTVPVL VCGLLTCMLV EKMRWFGYGE TLPEKVRDVL QQFDDQSRKK RTRQDKIKLI 300
  301 VQAIIGVWLV TALALHLAEV GLIGLSVIIL ATALTGVTDE HAIGKAFTES LPFTALLTVF 360
  361 FSIVAVIIDQ HLFAPIIQFV LQASEHAQLT LFYLFNGLLS SISDNVFVGT IYINEAKAAM 420
  421 ENGAISLKQF ELLAVAINTG TNLPSVATPN GQAAFLFLLT SALAPLIRLS YGRMVWMALP 480
  481 YTIVLTLIGL LCVEFTLAPA TEWMTQAGWL ATLS