YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16420290, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFLNMFFFD IYPYIAGSVF LIGSWLRYDY GQYTWRAASS QMLDRKGMNL ASNLFHIGIL  60
   61 GIFAGHFLGM LTPHWMYEAF LPVDVKQKMA MIAGGACGVL TLVGGILLLK RRLFSPRVRA 120
  121 TTTGADILIL SLLVIQCALG LLTIPFSAQH MDGSEMMKLV GWAQSVVTFH GGASAHLDGV 180
  181 AFIFRMHLVL GMTLFLLFPF SRLVHIWSVP VEYLTRKYQI VRARH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.94
Transmembrane Helix	8	28	0.89
Cytoplasmic	29	48	0.91
Transmembrane Helix	49	70	0.91
Non-Cytoplasmic	71	88	0.91
Transmembrane Helix	89	109	0.95
Cytoplasmic	110	126	0.83
Transmembrane Helix	127	147	0.92
Non-Cytoplasmic	148	180	0.79
Transmembrane Helix	181	206	0.76
Cytoplasmic	207	225	0.78