YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFIKQSTSS HARLNVPTLV QVAAMAIILI RGLDVLMIMN TLGIRGMGEF IHRSVQTWSL  60
   61 TLVFLASLVL VFVEIYCAFS LVKGRSWARW VYLATQIIVS GYLWAASLGY GYPELFSIAG 120
  121 ESKRDILHSL VMQKLPDLLI LFLLFIPAPS RRFFRLQ

Type	Start	End	Confidence
Cytoplasmic	1	15	0.89
Transmembrane Helix	16	38	0.84
Non-Cytoplasmic	39	57	0.86
Transmembrane Helix	58	79	0.92
Cytoplasmic	80	89	0.77
Transmembrane Helix	90	108	0.94
Non-Cytoplasmic	109	134	0.80
Transmembrane Helix	135	154	0.80
Cytoplasmic	155	157	0.87