YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197265628, gi...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTCWQVLGI EATTDTDAIR QAYLALLPSF HPETDPQGFK QLREAYENAL QGTTSPAITV  60
   61 VDEDPDTPWV NYLREIFGDL LADGERRFQP QAWQEFIQQI NKLSISQVEK SRWWLCAIAM 120
  121 KTFPISYSCL KLLSDRLAWE QGSDNRDVDA EEVEDLLFEI RRGDLFDYSL LLHLPVAVQN 180
  181 QTIAFYDALD NTFFEHPLYF AQLMAQHGPW IIPDNLRFQR RLLRWFSTLH WGIAELLPVA 240
  241 LAWQEAEPDN ATPGYYYLAQ RVFCGEGDSL LPELYAQWWA HPSTQLDDLL LRWCRQHRPD 300
  301 FFPLLVMAVE GREQVDINAE QLLYIPGSSA RSCLLWAEAL HSGALSPLSE SFIARRLNYG 360
  361 APAVSEAHSQ HPYWLLYQVA DSLACAEEPS AALLQSLVTK LDAPDICPLE ALVIRGLLGR 420
  421 AAAVATPCEA VVADEEPVTT VTSPSTEESG GGFGLWQVIK IILFIGVVGH VLRQFMH

Type	Start	End	Confidence
Non-Cytoplasmic	1	452	0.92
Transmembrane Helix	453	472	0.81
Cytoplasmic	473	477	0.69