YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	26	0.96
Non-Cytoplasmic	27	31	0.92
Transmembrane Helix	32	53	0.91
Cytoplasmic	54	87	0.98
Transmembrane Helix	88	109	0.92
Non-Cytoplasmic	110	116	0.78
Transmembrane Helix	117	138	0.95
Cytoplasmic	139	158	0.90
Transmembrane Helix	159	182	0.93
Non-Cytoplasmic	183	190	0.84
Transmembrane Helix	191	213	0.90
Cytoplasmic	214	220	0.91
Transmembrane Helix	221	242	0.91
Non-Cytoplasmic	243	255	0.82
Transmembrane Helix	256	276	0.94
Cytoplasmic	277	283	0.88
Transmembrane Helix	284	305	0.91
Non-Cytoplasmic	306	324	0.91
Transmembrane Helix	325	345	0.94
Cytoplasmic	346	360	0.88
Transmembrane Helix	361	385	0.86
Non-Cytoplasmic	386	399	0.80
Transmembrane Helix	400	423	0.84
Cytoplasmic	424	439	0.91
Transmembrane Helix	440	462	0.88
Non-Cytoplasmic	463	468	0.88
Transmembrane Helix	469	491	0.88
Cytoplasmic	492	514	0.90
Transmembrane Helix	515	533	0.95
Non-Cytoplasmic	534	549	0.83
Transmembrane Helix	550	571	0.92
Cytoplasmic	572	577	0.93
Transmembrane Helix	578	599	0.92
Non-Cytoplasmic	600	645	0.96
Transmembrane Helix	646	668	0.88
Cytoplasmic	669	701	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSGKYLVW TALSVLGAFA LGYIALNRGE QINALWIVVA SVCVYLIAYR FYGLYIAKKV  60
   61 LAVDPTRMTP AVRHNDGLDY VPTDKKVLFG HHFAAIAGAG PLVGPVLAAQ MGYLPGMIWL 120
  121 LAGVVLAGAV QDFMVLFVST RRDGRSLGEL VKEEMGATAG VIALVACFMI MVIILAVLAM 180
  181 IVVKALTHSP WGTYTVAFTI PLAIFMGIYL RYLRPGRIGE VSVIGLVFLI FAIISGGWVA 240
  241 ASPTWAPYFD FTGVQLTWML VGYGFVAAVL PVWLLLAPRD YLSTFLKIGT IVGLAVGILI 300
  301 MRPTLTMPAL TKFVDGTGPV WTGDLFPFLF ITIACGAVSG FHALISSGTT PKMLANEGQA 360
  361 CFIGYGGMLM ESFVAIMALV SACIIDPGVY FAMNSPMAVL APAGTADVVA SAAQVVSSWG 420
  421 FAITPDTLHQ IANEVGEQSI ISRAGGAPTL AVGMAYILHG ALGGMMDVAF WYHFAILFEA 480
  481 LFILTAVDAG TRAARFMLQD LLGVVSPGLK RTDSLPANLL ATALCVLAWG YFLHQGVVDP 540
  541 LGGINTLWPL FGIANQMLAG MALMLCAVVL FKMKRQRYAW VALVPTAWLL ICTLTAGWQK 600
  601 AFSPDAKIGF LAIANKFQAM IDSGNIPPQY TESQLAQLVF NNRLDAGLTI FFMVVVVVLA 660
  661 VFSIKTALAA LKIDKPTANE TPYEPMPENV DEIVTQAKGA H