YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16419067, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISLVVPVF NEEATIPIFY KTVREFEELK PYEVEIVFIN DGSKDATESI INKIAASDPL  60
   61 VIPLSFTRNF GKEPALFAGL DHATGDAVIP IDVDLQDPIE VIPHLIEKWQ AGADMVLAKR 120
  121 SDRSTDGRMK RKTAEWFYKL HNKISNPKIE ENVGDFRLMS REVVENIKQM PERNLFMKGV 180
  181 LSWVGGKTDV VEYARAERVA GDSKFNGWKL WNLALEGITS FSTFPLRIWT YIGLFIAGMS 240
  241 FLYGAWMIID KLIFGNNVPG YPSLLVSVLF LGGVQLIGIG ILGEYIGRIY IETKKRPKYI 300
  301 IKNEKKNG

Type	Start	End	Confidence
Cytoplasmic	1	227	0.94
Transmembrane Helix	228	249	0.92
Non-Cytoplasmic	250	263	0.85
Transmembrane Helix	264	287	0.87
Cytoplasmic	288	308	0.89