YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16418902, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLERLSWKRL VLELVLCCIP ALILSAFFGY LPWFLLAAVT GLLVWHFWNL LRLSWWLWVD  60
   61 RSMTPPPGRG SWEPLLYGLH QMQLRNKKRR RELGNLIKRF RSGAESLPDA VVLTTEEGGI 120
  121 FWCNGLAQQI LGLRWPDDNG QNILNLLRYP EFTQYLKTRD FTRPLHLVLN TGRHLEIRVM 180
  181 PYTDKQLLMV ARDVTQMHQL EGARRNFFAN VSHELRTPLT VLQGYLEMMQ EQALEGATRE 240
  241 KALHTMREQT YRMEGLVKQL LTLSKIEAAP ALLLNEKVDV PMMLRVVERE AQTLSQQKHT 300
  301 FTFEVDDSLS VLGNEEQLRS AISNLVYNAV NHTPAGTHIT VSWRRVAHGA EFCIQDNGPG 360
  361 IAAEHIPRLT ERFYRVDKAR SRQTGGSGLG LAIVKHALNH HESRLEIDSS PGKGTRFSFV 420
  421 LPERLIAKNS D

Type	Start	End	Confidence
Cytoplasmic	1	9	0.91
Transmembrane Helix	10	29	0.89
Non-Cytoplasmic	30	33	0.57
Transmembrane Helix	34	56	0.77
Cytoplasmic	57	431	0.84