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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16418854, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSENRHDT ISLLIEGMTC ASCVARVEKG IKAVPGVTDA TVNLATERAT VRGTASAEAV  60
   61 IAAIEKTGYK ARPIETAGQG EDDSEEKKEA ERVRLKRDLI LASVLALPVF VLEMGSHLIP 120
  121 GMHEWVIKTI GLQQSWYWQF ALTLLVLTIP GRRFYLKGFP ALARLAPDMN SLVAVGTAAA 180
  181 FGYSLVATFT PDLLPEGTVN VYYEAAAVIV ALILLGRFLE ARAKGRTSEA IKRLVGLQAR 240
  241 VAHVLREGRI VDIPVDEVVL GDCVEVRPGE RIPVDGEVTE GRSFVDESMI TGEPIPVEKS 300
  301 AGSAVVGGTV NQKGALTLRA TAVGGQTMLA QIIRLVEQAQ GSKLPIQAVV DKVTLWFVPM 360
  361 VMLIAALTFV VWLAFGPSPA LTFALINGVA VLIIACPCAM GLATPTSIMV GTGRGAEMGV 420
  421 LFRKGEALQL LKDAKVVAVD KTGTLTEGRP VLTDLDVASG FERREVLAKV AAVESRSEHP 480
  481 IARAIVVSAE EEGIALPGMS GFESVTGMGV YATVDGTRVD VGADRYMREI GVDISGFATT 540
  541 AERLGQEGKS PLYAAIDGQL AAIIAVADPI KPSTPAAINA LHQLGIKVAM ITGDNARTAQ 600
  601 AIARQLGIDD VVAEVLPEGK VEAIRRLKAA YGQVAFVGDG INDAPALAES DVGLAIGTGT 660
  661 DVAVESADVV LMSGNLQGVP NAIALSKATI RNIHQNLFWA FAYNTALIPV AAGALFPVWG 720
  721 ILLSPVFAAG AMAMSSVFVL GNALRLRRFR APMATPSDTS TT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle