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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|41584179, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKREKYTW LLLSTALITS GQILGGGEQI IKASVESQTN SVKKSKTAVE HSTTALSRQA  60
   61 VEAQLAAQGV NFERLTPEEQ QEVYVDVIVQ LEALPASENG SIDSQTASRA EIEQASNKVI 120
  121 AAQSGIKDEV QKITNQAIDK SYGYVVNGFA TKAKVGDIKK LREIKGVKSV TLAKVYFAAD 180
  181 TSANNMANVS TVWSNYQYKG EGTVVSIIDT GIDPNHKDLR LSDESKVKLT AKDIDGFTEN 240
  241 SGYGRYFTSK VPFGHNYSDN NDIITDDDPK EQHGMHVAGI VAANGTGKNS ASSVVGVAPE 300
  301 AQLLAMKAFS NSDSSSTTDS TSVIGAVDDS AKLGADVLNM SLGSVSGEQT EDDPEIAAVE 360
  361 KAVKHGTAAV ISAGNSGTST SNQEGVNKDF YGNPDMETIG SPGTSRSATT VASAENTKVT 420
  421 TDGMTVSTAD GKKIFGPSVT QLSPNTSHDA FDSKKFYIVK DASGKLGMGT PSQYTADVKG 480
  481 KVAVVSRGEI TFTDKQKYAQ AAGAAGLIIV NNAGGNTPLT SVLYNEGFPT AGLSTDDGNK 540
  541 LVAYVEAHPD ELLRVNVEVQ PLNNVIREED LMSSFTSYGP VSDLSFKPDI TAPGGNIWSL 600
  601 QNNNGYINMS GTSMASPFIA GSQALLVQAM NDKTGKFYET YQKMSGSERA ALIKNIQMNT 660
  661 ANIEVDVDHG SVIESPRRQG AGLVNVEAAI NAILHNPSTV SGSNGYPGVE LKDFQDRQHQ 720
  721 FTIKFTNRTN KDIEYGLNEN GKFSDVYTSE TDPKTGVLFE KKIDGASLTP SEKIVVPANS 780
  781 TKEVTINLSL PDNFKENQYV EGFMAFTGSD NSHLKIPYMG FFGDWAAPAI FDGLNGLAFN 840
  841 PGNNNLGTIV TAGNKNGAVG YAGLNQDEDG NYRVDPDAIA LSTADGASVS WVRPQYFLFR 900
  901 NANDVKAEIL NQDGEVINTL VSLAHVTKSY WAASSQRYAK FNYAPAWDGT YFNQQTNKTE 960
  961 KVPDGTYTYR VTGTVDGTKK QQHYDIKVKV DSVKPEVKNL KLGSHKDQTG KVSYVLKAEA1020
 1021 KDNFSGLNGQ ANTYVNGELN RSVAYDIVGS SSDGYQKIEV PLSDEQVKTL RAGKNDLAIA1080
 1081 VFDNATNAGT NSGTSNKPGE INFGLIIDNN LPQKITTVSD GYDMTDDSYT ISGTYPEKVY1140
 1141 GTYTDKDGKE HDLNISYDEA SERFVTKLPL SVSDYDTNVK FYADEEHETL ITQKRINVSL1200
 1201 VPPKLESLKV DDQETYTGNE EAKLSQTSED TVEVSGKVSD DTDKVAVKVA GKTYSAKPTK1260
 1261 EHTFKVKVPV SYGENTMNIV LTDKDGNSSS VKQIVKSSDR GKTVVSAKDV TFDNGIKFGT1320
 1321 TSVNTETENY DPKTGKLTLT GKVNRPTTTV RIGDHTVKVK ADGTFKLVLD LGKHGAKVFP1380
 1381 VLIGDTTVND TVQERLTFYV DSNNPELTLN QEKDQSGYVP VYTNKEEFKL QGTISDDYPY1440
 1441 YSLLINDNNV DANWDDVDYN GNKNLKKSFS HSVKLKEGKN TFNVVVVDNN DNRSEVQTLV1500
 1501 VYYKKAQKLA SPQITATTAS DKKSVTVTGK AKDGNVLYST DNGNKYNVLP EDGVTVKNNG1560
 1561 KLLFKTVDKY GNESEVVEYD VKTIGKEEST VDKSVAQARK DLRKKLDQAR ALGNTGKYTH1620
 1621 ESAKKLAQAR QEASKALKDK NATLQELKQA SEQLEEAIKN LVEKPVDQNK DKDKVEDKDS1680
 1681 QVNALKEKLE ETVKAGEKFD KDKYTDDSVE KVTKALDEAK VVLANKDANS TDVQDAIDSI1740
 1741 VNATKSLKEK QVSPEKTTQQ EDTPKENKDT EEVLAAKNAL KEKADKLSHL DTTKYTSESA1800
 1801 ENLSNALKKV NQVLTNKDAN KAQVQEALDS LSQAEKDLVE KTESNKDVET AKEQLREELN1860
 1861 KHKDEDKSQY TDDSAKVKDN AEKISEGVLD SKDAQADEVN KAKDSLVEAE KGLVKKEENK1920
 1921 PAESDTQEVD KAREALEQEV NKNANVNLDG YTPESQDKFK EILNGVRDVL NDKNASASSL1980
 1981 EKAEKVLETA TGVLTQVEHQ VELPKVEQPV VTPEKKQTEQ EEAKKSESSS VSTSKDEVKE2040
 2041 PEEKKQDAHS VSDKGTGTSV EKKGQTPADA LSQVEHQAEL SKNEQEEAKK SESHSASTSK2100
 2101 DEVKEPEEKK QDAESVSDKE SSTLVGKKHQ VARSAQESSK KNADNKVPTH KNSNKAQNTT2160
 2161 NSSTRSTKSS NNKELPKTGE RETFFGLLVT GITALFASLG TVLRIKNKK

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