YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41583041, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKKHHQKS NFFVKWFLNN RFSIALLNIL LFFLIILVFN QISFVLNPFW TFFNAIFPPI  60
   61 LVASIQYYLM DPVVDWMEKK LKVPRIITII LLFVIVVGGL IWIINTLIPI IQHQTDSLVK 120
  121 NWPTYWKDAQ KGFEKIIRDP RLNGVRGGIN QAISDAQTKM FKTGQDSFNL ALSNLSSAVN 180
  181 VITMIFMTLL TAPFVLFFML KDGHRLNSYV TKFAPKKLQP SFSSLLSDIN GAVASYIRGQ 240
  241 ITVAFWVGVM FAIGYSVIGL NYGITLAVLA GILNMIPYFG TFIAFIPAII LGLISSPMML 300
  301 IKVLIVFAIE QTLEGRVISP LVMGNKMNMN PVTTILLLIG ASAVAGLWGV IFAIPVYAVI 360
  361 KIIVTRLFNY YRKISNLYDD ESIEDSDTQG SKE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	39	0.96
Non-Cytoplasmic	40	48	0.72
Transmembrane Helix	49	70	0.91
Cytoplasmic	71	85	0.90
Transmembrane Helix	86	108	0.88
Non-Cytoplasmic	109	177	0.96
Transmembrane Helix	178	200	0.91
Cytoplasmic	201	241	0.80
Transmembrane Helix	242	256	0.81
Non-Cytoplasmic	257	257	0.07
Transmembrane Helix	258	273	0.64
Cytoplasmic	274	274	0.21
Transmembrane Helix	275	309	0.69
Non-Cytoplasmic	310	331	0.43
Transmembrane Helix	332	360	0.81
Cytoplasmic	361	393	0.57