YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42518311, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.93
Transmembrane Helix	14	37	0.85
Non-Cytoplasmic	38	43	0.78
Transmembrane Helix	44	63	0.91
Cytoplasmic	64	68	0.81
Transmembrane Helix	69	90	0.90
Non-Cytoplasmic	91	95	0.88
Transmembrane Helix	96	117	0.92
Cytoplasmic	118	125	0.78
Transmembrane Helix	126	145	0.94
Non-Cytoplasmic	146	163	0.87
Transmembrane Helix	164	181	0.96
Cytoplasmic	182	189	0.76
Transmembrane Helix	190	213	0.90
Non-Cytoplasmic	214	235	0.87
Transmembrane Helix	236	257	0.92
Cytoplasmic	258	312	0.77
Transmembrane Helix	313	332	0.73
Non-Cytoplasmic	333	338	0.52
Transmembrane Helix	339	359	0.83
Cytoplasmic	360	369	0.90
Transmembrane Helix	370	391	0.92
Non-Cytoplasmic	392	397	0.90
Transmembrane Helix	398	420	0.91
Cytoplasmic	421	442	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHTQVNHKK AALLGLQHLL AMYSGAIAVP LLIGTALKFN STQMTYLVSI DIFMCGLATA  60
   61 LQLLRNRYFG IGLPVVLGCA IQAVAPLQMI GKKFTIGTMY GAIIVAGVFV FLVAGYFSKI 120
  121 KKLFPPVVTG SLITVIGLSL IPVSIQNLGG GNSTAKNFGD PKNLLTGFIT VAIILALQVW 180
  181 GKGFIKSIAV LVGLIAGTLI ASTLGMVSLT PVAQASWFHL PQPFYFGMPQ FEWSSSLTMI 240
  241 IIALVSMVES TGVFFAIGDL LHKDITSDDL KKGYRAEGLA QILGGIFNTF PYTTFSQNVG 300
  301 LLELSGITTK RPIYWASGFL MLMGLLPKFG ALVTIIPDSV LGGAMLVMFT MIAVQGMRML 360
  361 KRVDFEDTRN ILIVAISIGL GLGVTVYPQV FQALPETIQL FLGNGIVVAS LSATILNLLF 420
  421 KGKSGLEEQH IPAAPEKIEV QS