YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52221204, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEAPQPGL SPPDSAHDPC KMFIGGLSWQ TTQEGLREYF SHFGDVKECL VMRDPLTKRS  60
   61 RGFGFVTFMD QAGVDKVLAQ SRHELDSKTI DPKVAFPRRA QPKMVTRTKK IFVGGLSVNT 120
  121 TVEDVKQYFE QFGKVDDAML MFDKTTNRHR GFGFVTFEGE DIVEKVCDIH FHEINNKMVE 180
  181 CKKAQPKEVM SPTGSVRGRS RVMPYGMDAF MLGIGMLGYP GFQAATYASR SYTGIAPGYT 240
  241 YQFPEFRVER TPLPGAPVLP ELTAIPLTAY GPVAAAAAAV VRGGFLGTSS PGPMAELYGA 300
  301 ANQESAVSSY ISAASPAPST GFGHSLGGPL IATAFTNGYH

Type	Start	End	Confidence
Cytoplasmic	1	204	0.89
Transmembrane Helix	205	225	0.81
Non-Cytoplasmic	226	263	0.90
Transmembrane Helix	264	286	0.78
Cytoplasmic	287	340	0.64