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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DJC14_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKHPGERG LCGVHHSGGS SLITSGSSVD PEILSFSGLR DSKETAPNGT RCLKEHSDPK  60
   61 CTQPPNPAHW SDPSHGPPRG PGPPREGGYP DESETCSEES GVDQELSREN ETGYQEDGSP 120
  121 SFLPIPSACN CQGSPGVPEG TCSEEGDGSS SSFCHHCTSP ALGEDEELEE EYDDEEPLKF 180
  181 PSDFSRVSSG KKPPSRRQRH RFLTKEDVRD SGRRDPKAPG RHRLARKRSQ TDKRRGLGLW 240
  241 GVEELCQLGQ AGFWWLIELL VLVGEYVETC GYLIYACRKL KGSDLDLFRI WVGVWARRLG 300
  301 GWARVMFQFL SQSFFSVAGL FIRLLRVVGA FLLLALALFL GCLQLGWRFL VGLGDRLGWR 360
  361 GKAAWLFSWL DSPALHHFLT LLKDSRPWQQ LVRVIQWGWL ELPWVKQRTQ RQGTAHVASG 420
  421 RYCQPEEEVA RLLTMAGVPE DELNPFHVLG VEATASDIEL KKAYRQLAVM VHPDKNHHPR 480
  481 AEEAFKVLRA AWDIVSNPER RKEYEMKRMA ENELSRSVNE FLSKLQDDLK EAMNTMMCSR 540
  541 CQGKHRRFEM DREPKSARYC AECNRLHPAE EGDFWAESSM LGLKITYFAL MDGKVYDITE 600
  601 WAGCQRVGIS PDTHRVPYHI SFGSRVPGTS GRQRATPESP PADLQDFLSR IFQVPPGPMS 660
  661 NGNFFAAPHP GPGTTSTSRP NSSVPKGEAK PKRRKKVRRP FQR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle