YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM9S2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	35	0.99
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	300	0.99
Transmembrane Helix	301	323	0.91
Cytoplasmic	324	364	0.95
Transmembrane Helix	365	388	0.91
Non-Cytoplasmic	389	396	0.79
Transmembrane Helix	397	419	0.91
Cytoplasmic	420	433	0.86
Transmembrane Helix	434	456	0.89
Non-Cytoplasmic	457	468	0.77
Transmembrane Helix	469	493	0.86
Cytoplasmic	494	520	0.95
Transmembrane Helix	521	542	0.90
Non-Cytoplasmic	543	555	0.76
Transmembrane Helix	556	579	0.91
Cytoplasmic	580	589	0.82
Transmembrane Helix	590	612	0.88
Non-Cytoplasmic	613	628	0.89
Transmembrane Helix	629	653	0.89
Cytoplasmic	654	663	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRPPASLP ARGPRLLLLS LLLLGTVPGP RPGSAFYLPG LAPVNFCTEE KKSNECKAEI  60
   61 ELFVNRLDSV ESVLPYEYTA FDFCQASEGK RPSENLGQVL FGERIEPSPY KFTFNKEETC 120
  121 KLVCTKTYHT EKAEDKQKLD FLKKSMLLNY QHHWIVDNMP VTWCYEVEDN QKFCNPGFPI 180
  181 GCYITDKGHA KDACVISSEF HERDTFYIFN HVDIKIQYHV VETGSMGARL VAAKLEPKSF 240
  241 RHTHIDKPDC SGPAMDISNK ASGEIKIAYT YSISFEEEKN IRWASRWDYI LESMPHTHIQ 300
  301 WFSIMNSLVI VLFLSGMVAM IMLRTLHKDI ARYNQMDSTE DAQEEFGWKL VHGDIFRPPR 360
  361 KGMLLSVFLG SGTQILIMTF VTLFFACLGF LSPANRGALM TCAVVLWVLL GTPAGYVAAR 420
  421 FYKSFGGEKW KTNVLLTSFL CPGIVFADFF IMNLILWGEG SSAAIPFGTL VAILALWFCI 480
  481 SVPLTFIGAY FGFKKNAIEH PVRTNQIPRQ IPEQSFYTKP LPGIIMGGIL PFGCIFIQLF 540
  541 FILNSIWSHQ MYYMFGFLFL VFIILVITCS EATILLCYFH LCAEDYHWQW RSFLTSGFTA 600
  601 VYFLVYAIHY FFSKLQITGT ASTILYFGYT MIMVLIFFLF TGTIGFFACF WFVTKIYSVV 660
  661 KVD