YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149038926, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKRQSGHV QSQRVPESFR DNSKAELGPC GWILVAVSFI FVLITFPISI WICIKIVKEY  60
   61 ERVIIFRLGR ILQGGAKGPG LFFILPCTDS FIKVDMRTIS FDIPPQEVLT KDSVTISVDG 120
  121 VVYYRVQNAT LAVANITNAD SATRLLAQTT LRNALGTKNL SQILSDREEI AHHMQSTLDD 180
  181 ATDDWGIKVE RVEIKDVKLP VQLQRAMAAE AEAAREARAK VIAAEGEMNA SRALKEASMV 240
  241 ITESPAALQL RYLQTLTTIA AEKNSTIVFP LPIDMLQGIM GSHH

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.60
Transmembrane Helix	30	54	0.87
Cytoplasmic	55	73	0.52
Transmembrane Helix	74	88	0.24
Non-Cytoplasmic	89	284	0.60