YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50418042, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	80	0.90
Non-Cytoplasmic	81	85	0.83
Transmembrane Helix	86	105	0.94
Cytoplasmic	106	129	0.92
Transmembrane Helix	130	149	0.96
Non-Cytoplasmic	150	156	0.88
Transmembrane Helix	157	175	0.95
Cytoplasmic	176	184	0.76
Transmembrane Helix	185	203	0.93
Non-Cytoplasmic	204	218	0.86
Transmembrane Helix	219	237	0.80
Cytoplasmic	238	244	0.61
Transmembrane Helix	245	269	0.82
Non-Cytoplasmic	270	277	0.62
Transmembrane Helix	278	297	0.75
Cytoplasmic	298	316	0.79
Transmembrane Helix	317	339	0.90
Non-Cytoplasmic	340	344	0.77
Transmembrane Helix	345	365	0.87
Cytoplasmic	366	398	0.89
Transmembrane Helix	399	421	0.80
Non-Cytoplasmic	422	436	0.71
Transmembrane Helix	437	458	0.88
Cytoplasmic	459	510	0.92
Transmembrane Helix	511	533	0.89
Non-Cytoplasmic	534	547	0.80
Transmembrane Helix	548	570	0.84
Cytoplasmic	571	645	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVGISNDG FSKDDTASDE DYASVSDSLP GSTKKDVWSK VSKPFDASEQ FVKKHRKILK  60
   61 YIGIGILCAG FAAFFIAACV LNFNRAVALV VITCVVLFFL GYDLVKKLYG KHIIQFLGPV 120
  121 GGCLKKNRKW LKWVFCLLVL AGLIAWLVID TSKRPEQLIS FGGVCMFILI LFLLSKHHRA 180
  181 VSWRAVFWGL GLEFVLGIFI IRTEPGYQAF KFVGEQIQIF LNYTTAGSGF VFGTTLIQEV 240
  241 FAFQALPIVV FFSCVMSVLY YVGLMQYVIL KISWFMQVTM GTTATESLSV AGNIFVGQTE 300
  301 APLLIRPYLP DMTKSEIHAV MTGGFGTIAG SVLGAYISFG IDASSLIAAS VMAAPCALAL 360
  361 SKLVYPEVEE SKFKSEEGVI IEKGEERNLL EAASNGASAS VGLVANIAAN LIAFMALLEF 420
  421 INAAFSWLGG MVNYPQLTLQ LILSYIFMPI AFMMGVKWDE AGMVGEMLGT KIILNEFVAY 480
  481 RQLSEYKNLR LSGADEWIDG QRQWISERAE VITTYALCGF ANFSSIGIML GGLSSMATER 540
  541 KGDLAKVVLR ALLTGACVSF VNACVAGILY NPRGIENCKD LLTSGNFINE TSYQFFTCCS 600
  601 NLYDSTQIVN GTLSFGDGWE NLPNAILGVE NCCMFYNNTV CNTWM