YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52789283
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDWRGRFPIR CLDDLRLPPR SLSRCPSPPP PAELVFSLLA DMADIKNNPE YSSFFGVMGA  60
   61 SSAMVFSAMG AAYGTAKSGT GIAAMSVMRP ELIMKSIIPV VMAGIIAIYG LVVAVLIANS 120
  121 LTDGITLYRS FLQLGAGLSV GLSGLAAGFA IGIVGDAGVR GTAQQPRLFV GMILILIFAE 180
  181 VLGLYGLIVA LILSTK

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.47
Transmembrane Helix	54	76	0.87
Cytoplasmic	77	95	0.51
Transmembrane Helix	96	118	0.92
Non-Cytoplasmic	119	130	0.52
Transmembrane Helix	131	155	0.85
Cytoplasmic	156	167	0.47
Transmembrane Helix	168	193	0.87
Non-Cytoplasmic	194	196	0.52