YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51980339
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGIIAKDPTS LEEEIKEIRR SGSNKALDKT PEFELSDIFY FCRKGMETIM DDEVTKRFSA  60
   61 EELESWNLLS RTNYNFQYIS LRLTILWGLG VLIRYCFLLP LRIALAFTGI SLLVAGTTVV 120
  121 GYLPSGRFKE FLSKHVHLMC YRICVRALTA IITYHNRKNR PRNGGICVAN HTSPIDVIIL 180
  181 ASDGYYAMVG QVHGGLMGVI QRAMVKACPH VWFERSEVKD RHLVAKRLTE HVQDKSKLPI 240
  241 LIFPEGTCIN NTSVMMFKKG SFEIGATVYP VAIKYDPQFG DAFWNSSKYG MVTYLLRMMT 300
  301 SWAIVCSVWY LPPMTREKEE DAVQFANRVK SAIARQGGLV DLLWDGGLKR EKVKDTFKEE 360
  361 QQKLYSKMIV GNHEDRSRS

Type	Start	End	Confidence
Cytoplasmic	1	77	0.85
Transmembrane Helix	78	98	0.85
Non-Cytoplasmic	99	102	0.69
Transmembrane Helix	103	125	0.89
Cytoplasmic	126	292	0.60
Transmembrane Helix	293	311	0.54
Non-Cytoplasmic	312	379	0.53