YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16358983
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLPGSLCDCS GSPAFSKVVE ATGLGPPQYV AQVTSRDGRL LSTVIRALDT PSDGPFCRIC  60
   61 HEGANGECLL SPCGCTGTLG AVHKSCLEKW LSSSNTSYCE LCHTEFAVEK RPRPLTEWLK 120
  121 DPGPRTEKRT LCCDMVCFLF ITPLAAISGW LCLRGAQDHL RLHSQLEAVG LIALTIALFT 180
  181 IYVLWTLVSF RYHCQLYSEW RKTNQKVRLK IREADSPEGP QHSPLAAGLL KKVAEETPV

Type	Start	End	Confidence
Cytoplasmic	1	130	0.97
Transmembrane Helix	131	153	0.87
Non-Cytoplasmic	154	167	0.85
Transmembrane Helix	168	190	0.88
Cytoplasmic	191	239	0.95