YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-15
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPILLHFL LLITQLNGSP AEVRLINDLM SGYVREERPT LDSSKPVVVS LGVFLQQIIN  60
   61 LSEKEEQLEV NAWLKFQWRD ENLRWEPTAY ENVTDLRHPP DALWTPDILL YNSVDSEFDS 120
  121 SYKVNLVNYH TGNINWMPPG IFKVSCKLDI YWFPFDEQVC YFKFGSWTYT RDKIQLEKGD 180
  181 FDFSEFIPNG EWIIIDYRTN ITVKQYECCP EQYEDITFTL HLRRRTLYYS FNLIAPVLLT 240
  241 MILVILGFTV SPETCEKVGL QISVSLAICI FLTIMSELTP QTSEAVPLLG VFFHTCNFIS 300
  301 VLATSFTVYV QSFHFRNQHV HERMDFWMRF ILLEWSPWLL RMKMPDRENN FQTLTESWKG 360
  361 RNRRESMART AFEYADGPVT QIHSMGIMLK DNFEELIYQV KQEKIADEKG IERLRVLQKI 420
  421 YDHVKMIREH DDDNDEDSRV ALEWRFAAIV VDRLCLLAFS LLIVVVSIII ALRAPYLFA

Type	Start	End	Confidence
Signal Peptide	1	21	0.93
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	227	0.99
Transmembrane Helix	228	250	0.93
Cytoplasmic	251	257	0.91
Transmembrane Helix	258	279	0.89
Non-Cytoplasmic	280	289	0.81
Transmembrane Helix	290	310	0.92
Cytoplasmic	311	453	0.96
Transmembrane Helix	454	474	0.93
Non-Cytoplasmic	475	479	0.81