YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62643012, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	92	0.96
Transmembrane Helix	93	113	0.95
Cytoplasmic	114	125	0.86
Transmembrane Helix	126	147	0.92
Non-Cytoplasmic	148	170	0.85
Transmembrane Helix	171	191	0.84
Cytoplasmic	192	222	0.89
Transmembrane Helix	223	242	0.82
Non-Cytoplasmic	243	278	0.85
Transmembrane Helix	279	298	0.96
Cytoplasmic	299	334	0.94
Transmembrane Helix	335	357	0.87
Non-Cytoplasmic	358	374	0.93
Transmembrane Helix	375	398	0.75
Cytoplasmic	399	476	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKAHLSMQV ASATTAAPMS KAAAGDELSG FFGLIPDLLE VANRSSNASL QLQDLWWELG  60
   61 LELPDGAAPG HPPGSGGAES ADTEARVRIL ISAVYWVVCA LGLAGNLLVL YLMKSKQGWR 120
  121 KSSINLFVTN LALTDFQFVL TLPFWAVENA LDFKWPFGKA MCKIVSMVTS MNMYASVFFL 180
  181 TAMSVARYHS VASALKSHRT RGHGRGDCCG QSLGESCCFS AKVLCGLIWA SAAIASLPNV 240
  241 IFSTTINVLG EELCLMHFPD KLLGWDRQFW LGLYHLQKVL LGFLLPLSII SLCYLLLVRF 300
  301 ISDRRVVGTT DGATAPGGSL STAGARRRSK VTKSVTIVVL SFFLCWLPNQ ALTTWSILIK 360
  361 FNVVPFSQEY FQCQVYAFPV SVCLAHSNSC LNPILYCLVR REFRKALKNL LWRIASPSLT 420
  421 SMRPFTATTK PEPEDHGLQA LAPLNATAEP DLIYYPPGVV VYSGGRYDLL PSSSAY