YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53765741
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERHVGITFK AENSRVSYLT IRMSIVNDPG NMSFVKETVD KLLKGYDIRL RPDFGGPPVC  60
   61 VGMNIDIASI DMVSEVNMDY TLTMYFQQYW RDKRLAYSGI PLNLTLDNRV ADQLWVPDTY 120
  121 FLNDKKSFVH GVTVKNRMIR LHPDGTVLYG LRITTTAACM MDLRRYPLDE QNCTLEIESY 180
  181 GYTTDDIEFY WRGGDKAVTG VERIELPQFS IVEHRLVSRN VVFATGAYPR LSLSFRLKRN 240
  241 IGYFILQTYM PSIMITILSW VSFWINYDAS AARVALGITT VLTMTTINTH LRETLPKIPY 300
  301 VKAIDMYLMG CFVFVFLALL EYAFVNYIFF GRGPQRQKKL AEKTAKAKND RSKSEINRVD 360
  361 AHGNILLAPM DVHNEMNEVA GSVGDTRNSA ISFDNSGIQY RKQSMPKEGH GRYMGDRSIP 420
  421 HKKTHLRRRS SQLKIKIPDL TDVNAIDRWS RIVFPFTFSL FNLVYWLYYV N

Type	Start	End	Confidence
Cytoplasmic	1	240	0.80
Transmembrane Helix	241	263	0.90
Non-Cytoplasmic	264	270	0.66
Transmembrane Helix	271	291	0.72
Cytoplasmic	292	305	0.53
Transmembrane Helix	306	330	0.84
Non-Cytoplasmic	331	451	0.61
Transmembrane Helix	452	470	0.56
Cytoplasmic	471	471	0.30